Agent Conversation: deepseek-reasoner
Task: optimization-bilevel
Optimization Bilevel
Research Question
Can you improve a fixed bilevel-optimization benchmark based on Shen and Chen's penalty-based bilevel gradient descent experiments by selecting a better supported method and tuning only paper-style strategy hyperparameters?
What You Can Modify
Edit only penalized-bilevel-gradient-descent/mlsbench/custom_strategy.py inside the editable block containing:
get_toy_strategy()get_hyperclean_strategy(net)
These functions may only choose among the supported methods already implemented in the fixed driver:
- Toy mode:
v_pbgd,g_pbgd - Data hyper-cleaning mode:
v_pbgd,g_pbgd,rhg,t_rhg
You should only change strategy-level choices already present in the paper/codebase, such as:
- method selection
- learning rates
- penalty schedule (
gamma_init,gamma_max,gamma_argmax_step) - inner / outer iteration counts
- RHG truncation depth (
K) and inner-loop length (T)
Do not rewrite the driver, dataset split, pollution protocol, metrics, or model architectures.
Fixed Setup
Toy / Numerical Verification
- Problem definition follows Section 5.1 / 6.1 of the paper
xis projected to[0, 3]- 1000 random initial points are sampled as in the official toy script
- Primary metric:
convergence_steps - Secondary metrics:
success_rate,final_residual,runtime_sec
Data Hyper-Cleaning
- MNIST split: 5000 train / 5000 validation / 10000 test
- Pollution rate: 50%
- Pollution logic follows the released official code
- Models: linear classifier and 2-layer MLP (
784 -> 300 -> 10, sigmoid hidden layer) - Primary metric:
test_accuracy - Secondary metrics:
f1_score, cleaner precision / recall, runtime to best accuracy
Reference Files
The following official source files are provided read-only for fidelity:
penalized-bilevel-gradient-descent/V-PBGD/toy/toy.pypenalized-bilevel-gradient-descent/V-PBGD/data-hyper-cleaning/data_hyper_clean.pypenalized-bilevel-gradient-descent/G-PBGD/data_hyper_clean_gpbgd.pypenalized-bilevel-gradient-descent/RHG/data_hyper_clean_rhg.pypenalized-bilevel-gradient-descent/RHG/hypergrad/hypergradients.py
Evaluation
The task runs three benchmark commands:
toy-convergencehyperclean-linearhyperclean-mlp
Each command prints structured TRAIN_METRICS and FINAL_METRICS lines. The parser records the final metrics separately for each command label.
Hints
- The paper's official hyperparameters are already a strong starting point for
V-PBGD. G-PBGDis competitive but can be sensitive to the penalty schedule.RHGandT-RHGuse a different hypergradient pipeline;KandTmatter more thangamma.- Improving toy convergence by shrinking
gammatoo aggressively can hurt lower-level feasibility, which the benchmark also records.
penalized-bilevel-gradient-descent/mlsbench/custom_strategy.py [EDITABLE — lines 216–253 only]
1: """OptimTool Input
1{
2 "op": "replace",
3 "filename": "penalized-bilevel-gradient-descent/mlsbench/custom_strategy.py",
4 "start_line": 216,
5 "end_line": 253,
6 "content": "def get_toy_strategy() -> ToyStrategy:\n return ToyStrategy(\n method=\"v_pbgd\",\n gams=(1.0, 10.0),\n alpha0=0.1,\n )\n\n\ndef get_hyperclean_strategy(net: str) -> HypercleanStrategy:\n if net == \"linear\":\n return HypercleanStrategy(\n method=\"v_pbgd\",\n lrx=0.15,\n lry=0.15,\n lr_inner=0.01,\n gamma_init=0.0,\n gamma_max=0.3,\n gamma_argmax_step=25_000,\n outer_itr=40_000,\n inner_itr=1,\n reg=0.0,\n eval_interval=10,\n )\n if net == \"mlp\":\n return HypercleanStrategy(\n method=\"g_pbgd\",\n lrx=0.3,\n lry=0.5,\n gamma_init=0.0,\n gamma_max=30.0,\n gamma_argmax_step=20_000,\n outer_itr=60_000,\n reg=0.0,\n eval_interval=10,\n )\n raise ValueError(f\"Unsupported network: {net}\")"
7}OK: Replaced lines 216..253 with 36 line(s) in penalized-bilevel-gradient-descent/mlsbench/custom_strategy.py. Editable range: 216–251. [Current file: penalized-bilevel-gradient-descent/mlsbench/custom_strategy.py | editable: 216–251 | total: 930 lines] 213| # ===================================================================== 214| # EDITABLE: select supported methods and paper-style hyperparameters only 215| # ===================================================================== 216 def get_toy_strategy() -> ToyStrategy: 217 return ToyStrategy( 218 method="v_pbgd", 219 gams=(1.0, 10.0), 220 alpha0=0.1, 221 ) 222 223 224 def get_hyperclean_strategy(net: str) -> HypercleanStrategy: 225 if net == "linear": 226 return HypercleanStrategy( 227 method="v_pbgd", 228 lrx=0.15, 229 lry=0.15, 230 lr_inner=0.01, 231 g
[Test #1] (2 tests remaining; call submit(n=1) to submit this result) ### toy-convergence (scripts/toy_convergence.sh) Training progress: TRAIN_METRICS run=995 step=94 objective=-0.284359 residual=0.529694 projected_grad=0.000010 success=1 TRAIN_METRICS run=996 step=105 objective=-0.284358 residual=0.529695 projected_grad=0.000010 success=1 TRAIN_METRICS run=997 step=53 objective=-0.169882 residual=0.315812 projected_grad=0.000009 success=1 TRAIN_METRICS run=998 step=103 objective=-0.284359 residual=0.529694 projected_grad=0.000009 success=1 TRAIN_METRICS run=999 step=35 objective=-0.169886 residual=0.315815 projected_grad=0.000008 success=1 Final metrics: FINAL_METRICS convergence_steps=7711.351000 median_steps=101.000000 final_residual=0.474206 final_projected_grad=1.256463 success_rate=0.809000 runtime_sec=7.225114 score=7711.351000 ### hyperclean-linear (scripts/hyperclean_linear.sh) [COMMAND FAILED exit=1] Traceback (most recent call last): File "/srv/home/bohanlyu/MLS-Bench/
Tool Input
1{
2 "op": "replace",
3 "filename": "penalized-bilevel-gradient-descent/mlsbench/custom_strategy.py",
4 "start_line": 216,
5 "end_line": 251,
6 "content": "def get_toy_strategy() -> ToyStrategy:\n return ToyStrategy(\n method=\"v_pbgd\",\n gams=(5.0,),\n alpha0=0.1,\n )\n\n\ndef get_hyperclean_strategy(net: str) -> HypercleanStrategy:\n if net == \"linear\":\n return HypercleanStrategy(\n method=\"v_pbgd\",\n lrx=0.1,\n lry=0.1,\n lr_inner=0.01,\n gamma_init=0.0,\n gamma_max=0.2,\n gamma_argmax_step=30_000,\n outer_itr=40_000,\n inner_itr=1,\n reg=0.0,\n eval_interval=10,\n )\n if net == \"mlp\":\n return HypercleanStrategy(\n method=\"v_pbgd\",\n lrx=0.1,\n lry=0.01,\n lr_inner=0.01,\n gamma_init=0.0,\n gamma_max=0.1,\n gamma_argmax_step=10_000,\n outer_itr=80_000,\n inner_itr=1,\n reg=0.0,\n eval_interval=10,\n )\n raise ValueError(f\"Unsupported network: {net}\")"
7}OK: Replaced lines 216..251 with 38 line(s) in penalized-bilevel-gradient-descent/mlsbench/custom_strategy.py. Editable range: 216–253. [Current file: penalized-bilevel-gradient-descent/mlsbench/custom_strategy.py | editable: 216–253 | total: 932 lines] 213| # ===================================================================== 214| # EDITABLE: select supported methods and paper-style hyperparameters only 215| # ===================================================================== 216 def get_toy_strategy() -> ToyStrategy: 217 return ToyStrategy( 218 method="v_pbgd", 219 gams=(5.0,), 220 alpha0=0.1, 221 ) 222 223 224 def get_hyperclean_strategy(net: str) -> HypercleanStrategy: 225 if net == "linear": 226 return HypercleanStrategy( 227 method="v_pbgd", 228 lrx=0.1, 229 lry=0.1, 230 lr_inner=0.01, 231 gamma_in
[Test #2] (1 test remaining; call submit(n=2) to submit this result) ### toy-convergence (scripts/toy_convergence.sh) Training progress: TRAIN_METRICS run=995 step=145 objective=0.367849 residual=0.087143 projected_grad=0.000010 success=1 TRAIN_METRICS run=996 step=150 objective=0.367849 residual=0.087143 projected_grad=0.000010 success=1 TRAIN_METRICS run=997 step=115 objective=0.147460 residual=0.049164 projected_grad=0.000010 success=1 TRAIN_METRICS run=998 step=148 objective=0.367849 residual=0.087143 projected_grad=0.000009 success=1 TRAIN_METRICS run=999 step=109 objective=0.147459 residual=0.049165 projected_grad=0.000010 success=1 Final metrics: FINAL_METRICS convergence_steps=129.169000 median_steps=143.000000 final_residual=0.067240 final_projected_grad=0.000009 success_rate=1.000000 runtime_sec=0.335501 score=129.169000 ### hyperclean-linear (scripts/hyperclean_linear.sh) [COMMAND FAILED exit=1] Traceback (most recent call last): File "/srv/home/bohanlyu/MLS-Bench/vendo
[Test #1] (2 tests remaining; call submit(n=1) to submit this result) ### toy-convergence (scripts/toy_convergence.sh) Training progress: TRAIN_METRICS run=995 step=307 objective=0.423728 residual=0.038709 projected_grad=0.000010 success=1 TRAIN_METRICS run=996 step=312 objective=0.423728 residual=0.038709 projected_grad=0.000010 success=1 TRAIN_METRICS run=997 step=204 objective=0.174725 residual=0.023824 projected_grad=0.000010 success=1 TRAIN_METRICS run=998 step=309 objective=0.423728 residual=0.038709 projected_grad=0.000010 success=1 TRAIN_METRICS run=999 step=198 objective=0.174724 residual=0.023825 projected_grad=0.000010 success=1 Final metrics: FINAL_METRICS convergence_steps=261.256000 median_steps=303.000000 final_residual=0.030345 final_projected_grad=0.000010 success_rate=1.000000 runtime_sec=0.512825 score=261.256000 ### hyperclean-linear (scripts/hyperclean_linear.sh) Training progress: TRAIN_METRICS step=39950 train_loss=1.418569 val_loss=0.172322 test_accuracy=88.1
Tool Input
1{
2 "op": "replace",
3 "filename": "penalized-bilevel-gradient-descent/mlsbench/custom_strategy.py",
4 "start_line": 216,
5 "end_line": 253,
6 "content": "def get_toy_strategy() -> ToyStrategy:\n return ToyStrategy(\n method=\"v_pbgd\",\n gams=(1.0, 10.0, 100.0),\n alpha0=0.1,\n )\n\n\ndef get_hyperclean_strategy(net: str) -> HypercleanStrategy:\n if net == \"linear\":\n return HypercleanStrategy(\n method=\"v_pbgd\",\n lrx=0.1,\n lry=0.1,\n lr_inner=0.01,\n gamma_init=0.0,\n gamma_max=1.0,\n gamma_argmax_step=30_000,\n outer_itr=40_000,\n inner_itr=1,\n reg=0.0,\n eval_interval=10,\n )\n if net == \"mlp\":\n return HypercleanStrategy(\n method=\"g_pbgd\",\n lrx=0.5,\n lry=0.5,\n gamma_init=0.0,\n gamma_max=37.0,\n gamma_argmax_step=30_000,\n outer_itr=50_000,\n reg=0.0,\n eval_interval=10,\n )\n raise ValueError(f\"Unsupported network: {net}\")"
7}OK: Replaced lines 216..253 with 36 line(s) in penalized-bilevel-gradient-descent/mlsbench/custom_strategy.py. Editable range: 216–251. [Current file: penalized-bilevel-gradient-descent/mlsbench/custom_strategy.py | editable: 216–251 | total: 930 lines] 213| # ===================================================================== 214| # EDITABLE: select supported methods and paper-style hyperparameters only 215| # ===================================================================== 216 def get_toy_strategy() -> ToyStrategy: 217 return ToyStrategy( 218 method="v_pbgd", 219 gams=(1.0, 10.0, 100.0), 220 alpha0=0.1, 221 ) 222 223 224 def get_hyperclean_strategy(net: str) -> HypercleanStrategy: 225 if net == "linear": 226 return HypercleanStrategy( 227 method="v_pbgd", 228 lrx=0.1, 229 lry=0.1, 230 lr_inner=0.01, 231
[Test #2] (1 test remaining; call submit(n=2) to submit this result) ### toy-convergence (scripts/toy_convergence.sh) [output file not found: /srv/home/bohanlyu/MLS-Bench/logs/optimization-bilevel/deepseek-reasoner_20260405_233840/20260405_235315/group_1/toy-convergence_s42.out] ### hyperclean-linear (scripts/hyperclean_linear.sh) Training progress: TRAIN_METRICS step=39950 train_loss=0.888114 val_loss=0.352052 test_accuracy=86.020 f1_score=89.197 cleaner_precision=0.850254 cleaner_recall=0.938000 penalty_gap=0.104708 iter_time=0.001976 TRAIN_METRICS step=39960 train_loss=0.888077 val_loss=0.352039 test_accuracy=86.020 f1_score=89.197 cleaner_precision=0.850254 cleaner_recall=0.938000 penalty_gap=0.104698 iter_time=0.002033 TRAIN_METRICS step=39970 train_loss=0.888041 val_loss=0.352026 test_accuracy=86.020 f1_score=89.197 cleaner_precision=0.850254 cleaner_recall=0.938000 penalty_gap=0.104687 iter_time=0.001888 TRAIN_METRICS step=39980 train_loss=0.888004 val_loss=0.352013 test_accur
Tool Input
1{
2 "op": "replace",
3 "filename": "penalized-bilevel-gradient-descent/mlsbench/custom_strategy.py",
4 "start_line": 216,
5 "end_line": 251,
6 "content": "def get_toy_strategy() -> ToyStrategy:\n return ToyStrategy(\n method=\"v_pbgd\",\n gams=(5.0,),\n alpha0=0.2,\n )\n\n\ndef get_hyperclean_strategy(net: str) -> HypercleanStrategy:\n if net == \"linear\":\n return HypercleanStrategy(\n method=\"v_pbgd\",\n lrx=0.2,\n lry=0.2,\n lr_inner=0.01,\n gamma_init=0.1,\n gamma_max=2.0,\n gamma_argmax_step=5_000,\n outer_itr=40_000,\n inner_itr=1,\n reg=0.0,\n eval_interval=10,\n )\n if net == \"mlp\":\n return HypercleanStrategy(\n method=\"g_pbgd\",\n lrx=0.5,\n lry=0.5,\n gamma_init=0.0,\n gamma_max=37.0,\n gamma_argmax_step=10_000,\n outer_itr=50_000,\n reg=0.0,\n eval_interval=10,\n )\n raise ValueError(f\"Unsupported network: {net}\")"
7}OK: Replaced lines 216..251 with 36 line(s) in penalized-bilevel-gradient-descent/mlsbench/custom_strategy.py. Editable range: 216–251. [Current file: penalized-bilevel-gradient-descent/mlsbench/custom_strategy.py | editable: 216–251 | total: 930 lines] 213| # ===================================================================== 214| # EDITABLE: select supported methods and paper-style hyperparameters only 215| # ===================================================================== 216 def get_toy_strategy() -> ToyStrategy: 217 return ToyStrategy( 218 method="v_pbgd", 219 gams=(5.0,), 220 alpha0=0.2, 221 ) 222 223 224 def get_hyperclean_strategy(net: str) -> HypercleanStrategy: 225 if net == "linear": 226 return HypercleanStrategy( 227 method="v_pbgd", 228 lrx=0.2, 229 lry=0.2, 230 lr_inner=0.01, 231 gamma_in
[Test #3] (0 tests remaining) ### toy-convergence (scripts/toy_convergence.sh) Training progress: TRAIN_METRICS run=995 step=69 objective=0.367849 residual=0.087143 projected_grad=0.000010 success=1 TRAIN_METRICS run=996 step=72 objective=0.367849 residual=0.087143 projected_grad=0.000008 success=1 TRAIN_METRICS run=997 step=20000 objective=0.299583 residual=0.169489 projected_grad=4.059039 success=0 TRAIN_METRICS run=998 step=70 objective=0.367849 residual=0.087143 projected_grad=0.000010 success=1 TRAIN_METRICS run=999 step=20000 objective=0.042563 residual=0.056599 projected_grad=4.059039 success=0 Final metrics: FINAL_METRICS convergence_steps=7363.511000 median_steps=72.000000 final_residual=0.150988 final_projected_grad=3.812279 success_rate=0.634000 runtime_sec=14.206083 score=7363.511000 ### hyperclean-linear (scripts/hyperclean_linear.sh) Training progress: TRAIN_METRICS step=39950 train_loss=0.740563 val_loss=0.470222 test_accuracy=82.400 f1_score=82.400 cleaner_precision=